PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr019687.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 34278.7 Da PI: 7.9674 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.4e-19 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++vk +G+++W++I++ ++ gR++k+c++rw + Pbr019687.1 12 KGPWSPEEDEELQNLVKIYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ Pbr019687.1 66 PFSPEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.97 | 7 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-32 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-17 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-18 | 12 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 13 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-16 | 14 | 56 | No hit | No description |
SMART | SM00717 | 7.7E-15 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.849 | 64 | 113 | IPR017930 | Myb domain |
CDD | cd00167 | 4.97E-12 | 66 | 109 | No hit | No description |
Pfam | PF00249 | 3.8E-15 | 66 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 66 | 112 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence Send to blast |
MASTKKVVDR IKGPWSPEED EELQNLVKIY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP 60 EVEHRPFSPE EDDTIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSMSEDL 120 SSDVHAHPPH KRSASVGAVS GTGLYFNPGS PSGSDLSDSS LHGGVSPSSQ VFTPLARPVP 180 PPIAPPPMEA ATSAVAVDPP TSLSLSLPGS ESCDGSNHTA SGFGSNPIVS PTQMVEQPHE 240 VAAPLPVVGL LPPPRQSNLN NDQRFFSSEF LDVMHEMIRK EVRNYMTGIE QTGQCMHTEA 300 IRNAVIKRIG ISKIE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-40 | 11 | 113 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 8e-40 | 11 | 113 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 8e-40 | 11 | 113 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr019687.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB627312 | 0.0 | AB627312.1 Malus x domestica mRNA, microsatellite: MEST188, clone: SAM01_20_H07. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009360105.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | O23160 | 9e-90 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | D9ZJ62 | 0.0 | D9ZJ62_MALDO; MYB domain class transcription factor | ||||
STRING | XP_009360105.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-71 | myb domain protein 73 |
Publications ? help Back to Top | |||
---|---|---|---|
|