PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr019521.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 19985.8 Da PI: 8.0542 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.5 | 7.8e-14 | 20 | 70 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++kGVr + +grWv+eIr p+ + +++ g+++ ++Aa+a++aa +++g+ Pbr019521.1 20 RHKGVRMRA-WGRWVSEIRLPK----SgIKIWFGTYDALDQAARAYDAAVYCIHGA 70 58****998.**********94....3599***********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.65E-23 | 20 | 79 | No hit | No description |
Pfam | PF00847 | 1.1E-7 | 20 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-25 | 20 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.744 | 20 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-17 | 21 | 78 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-24 | 21 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MDMGRTSTLK KVPRQRAPGR HKGVRMRAWG RWVSEIRLPK SGIKIWFGTY DALDQAARAY 60 DAAVYCIHGA SAEFNFPENK RPVPPTSSAV HVKMKDIQAI ATYFSSADVS VSTLVSSTMI 120 TQVPSDKPAS PNLLISTGMA TDYEVDCGSF APSCATGAAV TSPENLQLDD FLMLDTGWIA 180 EFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 19 | 77 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00463 | DAP | Transfer from AT4G31060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr019521.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009376369.1 | 1e-134 | PREDICTED: ethylene-responsive transcription factor ERF015 | ||||
TrEMBL | M5XQ74 | 1e-88 | M5XQ74_PRUPE; Uncharacterized protein | ||||
STRING | XP_009376369.1 | 1e-133 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15479 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 8e-35 | ERF family protein |