PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr017838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Trihelix | ||||||||
Protein Properties | Length: 447aa MW: 50958.3 Da PI: 6.2929 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69.2 | 8e-22 | 119 | 215 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ v++Li+++ ++++ + ++ +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d + Pbr017838.1 119 KWTDNVVRLLIDVVACVGDDGSVESseglkrksgilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPALMDAM 215 7**************777777754335666777999**********************************************569999998888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.1E-19 | 117 | 242 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MDGSELGGGF LSGPSGGILD LESPVPRRQE MQLGHQLLGH QHHMNVMGGV AGDRHPIGLV 60 EVKGSIPKLG SIIGKGKAVA SFNANNGYNL SDEDEQNYTD DESIEGAKGK KGCPWQRMKW 120 TDNVVRLLID VVACVGDDGS VESSEGLKRK SGILQKKGKW KTVSKIMISK GCHVSPQQCE 180 DKFNDLNKRY KRLNDILGRG TSCRVVENPA LMDAMPHLSA KVKDDVRKIL SSKHLFYKEM 240 CAYHNGQRIP DCQDLDPHGY SLPLGRCSKD NNGSAEEEAE ENHDSEDDEL DNEDDNDAEN 300 DRERMRRMGE GKRVREEDGH LWPQYVLLDS FQVEMGEIFQ DPTKSLWERR DWIKKQKQQL 360 QEQRVSFQAE ALEIEKQRYK WLRYCSKKDR ELERLRLENE RMKLENERRV LQLRQKELEI 420 DLRRSEASLE PSSLGLGRDH IDLGRH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr017838.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009375065.1 | 0.0 | PREDICTED: uncharacterized protein LOC103963911 | ||||
TrEMBL | A0A498KCL9 | 0.0 | A0A498KCL9_MALDO; Uncharacterized protein | ||||
STRING | XP_009375065.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 7e-64 | sequence-specific DNA binding transcription factors |