PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr017391.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | ERF | ||||||||
Protein Properties | Length: 155aa MW: 16799.7 Da PI: 9.5014 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 25 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk++r++lg+f+ta +Aa+a+++a+++++g Pbr017391.1 25 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAVDAARAYDKAAREFRG 74 59*******.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.2E-37 | 25 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.83E-30 | 25 | 82 | No hit | No description |
PROSITE profile | PS51032 | 23.261 | 25 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 25 | 83 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-12 | 25 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-32 | 25 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-11 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-11 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MAPTTAKSLS KTVSEDPNPT SNEIRYRGVR KRPWGRYAAE IRDPGKKTRV WLGTFDTAVD 60 AARAYDKAAR EFRGGKAKTN FPTPSELQLD AVNIADGAAA FQLARETCRF DRPAPISGSA 120 HSDYSASSVV DFEPSSRNVR LDLDLNLPAP SEVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 26 | 82 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-20 | 26 | 82 | 6 | 63 | ATERF1 |
3gcc_A | 2e-20 | 26 | 82 | 6 | 63 | ATERF1 |
5wx9_A | 8e-20 | 25 | 87 | 14 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr017391.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732434 | 1e-130 | GU732434.1 Malus x domestica AP2 domain class transcription factor (AP2D10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018503041.1 | 1e-101 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A482LWA5 | 8e-55 | A0A482LWA5_9ROSA; Transcription factor ERF35 | ||||
STRING | XP_009339319.1 | 1e-105 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-28 | erf domain protein 9 |