PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr017297.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 277aa    MW: 30327.7 Da    PI: 4.8594
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr017297.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20122172155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr+++ +grW+AeIrdp   ++rkr++lg+f+taeeAa  +++a+  l+g
  Pbr017297.1 122 KKFRGVRRRP-WGRWAAEIRDP---NRRKRVWLGTFDTAEEAASVYDRAAILLKG 172
                  59********.**********8...335**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.1E-679276IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.15E-32122182No hitNo description
PROSITE profilePS5103223.999123180IPR001471AP2/ERF domain
PfamPF008471.0E-13123170IPR001471AP2/ERF domain
SMARTSM003803.6E-37123186IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-22123180IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-30123180IPR001471AP2/ERF domain
PRINTSPR003672.0E-10124135IPR001471AP2/ERF domain
PRINTSPR003672.0E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MTTFQPTSSA HSAVKFSEQI TTVTKPMIQE PDNPNPVPPK LVRIILTDAD ATDSSSDDED  60
SGVRRVKRHV RQISLELSSP SSSSPSSSSS FSSGQSKRAR KDPKPVKRTG SKSPAMDAAR  120
QKKFRGVRRR PWGRWAAEIR DPNRRKRVWL GTFDTAEEAA SVYDRAAILL KGPDAVTNFS  180
NAVTTEEKVV ADVVVPAAEE GCGCVSPPSS EALSSPTSVL RYEEQTPFDG FIYGDVDDFV  240
FDIDLPLSFP DIMLSSNNFV RDEFGEFDVD DFLAES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-19118179971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127146RRRPWGRWAAEIRDPNRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr017297.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009374395.20.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A498ISF91e-150A0A498ISF9_MALDO; Uncharacterized protein
STRINGXP_009374395.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-33cytokinin response factor 4