PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016539.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 547aa    MW: 59006 Da    PI: 8.1921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016539.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.1e-09341388455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Pbr016539.1 341 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 388
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.44E-10335392No hitNo description
SuperFamilySSF474591.09E-16335406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16337405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-6341388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9343393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MEKGSLAKPT WNPSGFSMEM QSNELNCAPQ QLPNSLFNAN WDNSLDQTDP FESALSSIVS  60
SPIAAAGNGG EGGDMIRELI GRLGSISNSG EISPHSYISS NYNNSSTNTS CYSTPLNSSQ  120
RGSLPIENLA QFQADPGFVE RAARFSCFGG GGGGNFGGQF NLNEAELAYR SMARIDSGKL  180
SRVSSNQSLK VAAGSQLAAQ ETNKSSPLDG NSAPDKKFIS RFSRASTPEN GELGDSREGS  240
SVSQQIPGGD LSVKAEIVTN SRKRKSAARG KAKASSSSPS VKDAKVVAEK EEPNAKKSKN  300
DEASGKEKET SKAKTKANSE TPEAPKDYIH VRARRGQATD SHSLAERVRR EKISERMKFL  360
QDLVPGCNKV TGKAVMLDEI INYVQSLQCQ VEFLSMKLST VNPRMDLNME ALLSKDIIQS  420
RGSLQNALYQ LDSSVPSFPF GYQPQQLPPL HSSSISGATD TQFPANPLNS ALRQSHGMQL  480
PAFDRFGEAA SQMPTLFEDD LQSVVQMGFG QIQQXXXXXX XXXXXXXXXX XXXSRRVFMA  540
QGLQLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260265SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016539.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373612.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A498JZS90.0A0A498JZS9_MALDO; Uncharacterized protein
STRINGXP_009373612.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.14e-68bHLH family protein