PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016364.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 376aa    MW: 40395.7 Da    PI: 6.5853
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016364.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001790109221
                  EETTTTEEESSHHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                  +C+ Cgk+F ++  L  H+r
  Pbr016364.1  90 PCTECGKTFWSWKALFGHMR 109
                  5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01789111IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.72389116IPR007087Zinc finger, C2H2
SuperFamilySSF576675.34E-990111No hitNo description
PfamPF139121.7E-791113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.2E-491111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576675.34E-9197224No hitNo description
PfamPF139121.6E-9201225IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471202229IPR007087Zinc finger, C2H2
SMARTSM003550.32202224IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
SuperFamilySSF576671.99E-5275301No hitNo description
PfamPF139122.2E-11276300IPR007087Zinc finger, C2H2
SMARTSM003550.034276298IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286276303IPR007087Zinc finger, C2H2
PROSITE patternPS000280278298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MNNSPDIDFR FPISPPTHQD AVVPAAPATT IAYAVSSSST CFTAEDKTHH NPRKKRSKLI  60
RLDNQAAPNK VLRPKHAKKP DPSAPKITKP CTECGKTFWS WKALFGHMRC HPERQWRGID  120
PPPNLRLPAS PNITLSELGL AMGEEDHEAA SSLLMLSSGI TSGTSNEIIV TTTATQSVSN  180
TSNLQGIQEV FDGGNSNNSG RFECSSCKKV FASHQALGGH RASHKNVKGC FAITRSDGEV  240
DQDHHHHNEH GDGDGDGDDD VMDEDHMELV GSSAGHKCSV CWRVFSSGQA LGGHMRCHWE  300
KGEENQLELG LGFNLQQPYG TSRELLLGQN SAGGSGGLDL NLPSAAASTS HTADDQYYSS  360
SYSSSGLTLD LRLGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016364.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018506702.10.0PREDICTED: zinc finger protein ZAT3-like
TrEMBLA0A498JPT40.0A0A498JPT4_MALDO; Uncharacterized protein
STRINGXP_009373429.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF6667710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.15e-78C2H2-like zinc finger protein