PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr016338.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | G2-like | ||||||||
Protein Properties | Length: 98aa MW: 10836.5 Da PI: 9.8446 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.7 | 7.1e-30 | 28 | 78 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWtp+LH+rFv+av++LGG++kAtPk++l++m++kgLtl+h+kSHLQ Pbr016338.1 28 KPRLRWTPDLHDRFVDAVTKLGGPDKATPKSLLRIMGLKGLTLYHLKSHLQ 78 79************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-28 | 24 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.781 | 25 | 85 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.1E-22 | 28 | 79 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 8.96E-14 | 28 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.7E-7 | 30 | 78 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MERNIYVSCE GEGNCGYENG VMMTRDPKPR LRWTPDLHDR FVDAVTKLGG PDKATPKSLL 60 RIMGLKGLTL YHLKSHLQVP ANPRYTTNAS HKVVVSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-21 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-21 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-21 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-21 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-21 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-21 | 28 | 85 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-21 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-21 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-21 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-21 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-21 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-21 | 28 | 85 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr016338.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347087.1 | 5e-48 | PREDICTED: myb family transcription factor PHL11 | ||||
Refseq | XP_028953847.1 | 5e-48 | myb family transcription factor PHL11-like | ||||
Swissprot | C0SVS4 | 1e-34 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A498HNU9 | 1e-46 | A0A498HNU9_MALDO; Uncharacterized protein | ||||
STRING | XP_009347087.1 | 2e-47 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5101 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 4e-34 | G2-like family protein |
Publications ? help Back to Top | |||
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