PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr015073.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 326aa MW: 36437.8 Da PI: 10.4408

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr015073.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	9e-31	264	321	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp ++++tYegeH+h+ Pbr015073.1 264 DEFSWRKYGQKPIKGSPYPRGYYKCSSIrGCPARKHVERCLEDPAMLIVTYEGEHKHS 321 99*********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	3.4E-12	216	260	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	4.1E-33	250	322	IPR003657	WRKY domain
PROSITE profile	PS50811	29.31	257	323	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	258	322	IPR003657	WRKY domain
SMART	SM00774	8.0E-37	262	322	IPR003657	WRKY domain
Pfam	PF03106	6.2E-26	264	320	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MEEVEAANRA AVGSCHRVLN LLCKPKPWKN LQVETEVAVF KFKRVLSLLS HGRGRVRKLK 60 KNLNPPPFPQ NIFSDGPNYS DISPKPLQLL PPTFPKTPHA EKKFLGNPVL DANLKLPLQI 120 PKTKTLKQHQ EEREKLQFHP QQVKYQSEMV FSGIDSGINL AFDRSSSSFN PSMTSARSFM 180 SCLSIGDGGE VNTGRDSFRL INGVPRVSGQ SSQQQSRCTG VVENGSVNCG SSGKCQYPKK 240 RKLRVKRTFK VPAISDKTSD IPPDEFSWRK YGQKPIKGSP YPRGYYKCSS IRGCPARKHV 300 ERCLEDPAML IVTYEGEHKH SQSAR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-20	260	320	12	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr015073.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009372169.1	0.0	PREDICTED: probable WRKY transcription factor 74
Swissprot	Q93WU6	1e-88	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A498K3L1	0.0	A0A498K3L1_MALDO; Uncharacterized protein
STRING	XP_009372169.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2637	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	3e-87	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]