PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr014650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | WRKY | ||||||||
Protein Properties | Length: 160aa MW: 17891.6 Da PI: 7.0443 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70.5 | 2.3e-22 | 55 | 113 | 2 | 57 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--S CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHn 57 dDg +WrKYGqK+++++++pr+ +rCt++ gC+++k++++ ++ p+v+ +tY g+H+ Pbr014650.1 55 DDGRAWRKYGQKVIHNAKHPRNHFRCTHKfdqGCKATKHIQQVQDHPSVLRTTYYGTHT 113 8***************************9999**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-23 | 39 | 114 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-22 | 47 | 114 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.864 | 49 | 117 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-28 | 54 | 119 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-21 | 55 | 113 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MVCCESGSSS DPLCEDPGDS SISCKSTSTF KDGRGSYKRR KTTHSWTTDT PDLIDDGRAW 60 RKYGQKVIHN AKHPRNHFRC THKFDQGCKA TKHIQQVQDH PSVLRTTYYG THTLTSHDNH 120 WLPSDYLVSP DDLMAFKSSG PVSGFSSSID QYDGDDDVF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-20 | 54 | 113 | 8 | 67 | OsWRKY45 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr014650.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028945727.1 | 6e-59 | probable WRKY transcription factor 70 | ||||
Swissprot | K4BIZ9 | 5e-26 | WRK70_SOLLC; WRKY DNA-binding transcription factor 70 | ||||
TrEMBL | A0A498IG34 | 2e-58 | A0A498IG34_MALDO; Uncharacterized protein | ||||
STRING | XP_008359948.1 | 3e-57 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1995 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 2e-27 | WRKY DNA-binding protein 70 |
Publications ? help Back to Top | |||
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