PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013867.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 345aa    MW: 37902.9 Da    PI: 7.4741
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013867.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.4e-1091115126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC+ f++ GtC+y  +C+FaH+
  Pbr013867.2  91 FKTKLCCKFRA-GTCPYVTNCNFAHS 115
                  69*********.*************8 PP
2zf-CCCH17.29.5e-06164189126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  yk + C+ f+    C+yGd+C+F H+
  Pbr013867.2 164 YKGRHCKKFYTEEGCSYGDNCTFLHD 189
                  78888********************7 PP
3zf-CCCH43.55.1e-14224249126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ +  tG+C++G++C+FaHg
  Pbr013867.2 224 WKTRICNKWELTGYCPFGSKCHFAHG 249
                  8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.2E-1488123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-888121IPR000571Zinc finger, CCCH-type
SMARTSM003560.00390116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13190117IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-791115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-9161191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7162191IPR000571Zinc finger, CCCH-type
SMARTSM003560.16163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.798163191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-16220253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-10221254IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-9223250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422223251IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-11224249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDYGRESNAV QVITGNSVGD IWSGDQAVWA TEDEYRVWNN GDAMADTMSN SSYDQRQSQS  60
RSGSEPPNKK SRNSQDATSS NRSKAIGKMF FKTKLCCKFR AGTCPYVTNC NFAHSIEELR  120
RPPPNWQDIV AAHEEEKAVS SEPREEYQIP IVSTGYGVET PRSYKGRHCK KFYTEEGCSY  180
GDNCTFLHDE QSKNRESVAI SLGPGGYGGA AAAVNGANNK PSNWKTRICN KWELTGYCPF  240
GSKCHFAHGV AELHRYGGGL VEGETRDSSS VAPDNKQGAM PSKTPGDAVV VSVPLVSHSD  300
VYHLGVPSQR SSIVIQRSGP RAHQKWKGPD KISRIYGDWI DDIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013867.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431652e-41AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371211.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ31e-130C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A498JQ570.0A0A498JQ57_MALDO; Uncharacterized protein
STRINGXP_009371210.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-123C3H family protein