PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013623.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 348aa    MW: 38845.8 Da    PI: 5.8778
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013623.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.6e-30136197159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+edp+++eitY+g+H+++
  Pbr013623.1 136 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqGCLATKQVQRSDEDPTIFEITYRGKHTCT 197
                  59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.261131194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-29132198IPR003657WRKY domain
SuperFamilySSF1182903.92E-26135198IPR003657WRKY domain
SMARTSM007743.7E-42136198IPR003657WRKY domain
PfamPF031062.2E-27137196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MENCNIHWEQ KSLVDELAQG RELARQLQIH LNVPSSSYGT RELLVQKIIL SYEKALSMLN  60
SSSSASGGEQ QQPTGHVAIR MVESPPHSLN ESPRSEDSDR EFKDHDNKDS SRKRKNLPRW  120
TQQIRVTSGM GLEGPLDDGF SWRKYGQKDI LGAKYPRGYY RCTHRNVQGC LATKQVQRSD  180
EDPTIFEITY RGKHTCTQAS AGTSTPPSPS PLQPERTERQ NNLVDPQQNQ QQSQQHTFLN  240
LPEGLRVITE GLDTREELFP SFNSPSPLNN SYVGSFYPPF AGPTTSETNY FSMSQRDFGV  300
DQNFQSGETI SAPTSATNSP SVGLDIPFGQ ADQLFPNFSF DGPGFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-20136196868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013623.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352055.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A498KLF80.0A0A498KLF8_MALDO; Uncharacterized protein
STRINGXP_009352055.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.17e-54WRKY family protein