PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012750.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 280aa    MW: 31327.9 Da    PI: 4.624
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012750.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv+    +G  +W+++++  g++R++k+c++rw +yl
      Pbr012750.1 14 KGPWTAEEDKKLVNFLLTHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.81.9e-1672111647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
      Pbr012750.1  72 DDEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                      69***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-21562IPR009057Homeodomain-like
PROSITE profilePS5129414.181961IPR017930Myb domain
SuperFamilySSF466891.18E-2611108IPR009057Homeodomain-like
SMARTSM007172.0E-131363IPR001005SANT/Myb domain
PfamPF002492.6E-151461IPR001005SANT/Myb domain
CDDcd001673.63E-101661No hitNo description
PROSITE profilePS5129426.69962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2463117IPR009057Homeodomain-like
SMARTSM007171.5E-1466114IPR001005SANT/Myb domain
CDDcd001671.24E-1171112No hitNo description
PfamPF002491.5E-1472111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLVNFLL THGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL NDDEEQLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPITHEPLH KQVITPEEMP CEASDQPAGS DVNIPQNMDI PEHEVYSNSE ASNQPAGLDM  180
NIPRNMNIPE HEISSNSDGG GSASENSPSN ESQSAEPNPN YIEEGDPLVS FILSDTFLED  240
LTWDFSTSSE DGSADNPTEE NSLAWFMDCK DFGVQDFEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012750.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3702300.0AB370230.1 Malus x domestica MdMYBB mRNA for myb-related transcription factor, complete cds.
GenBankDQ0744670.0DQ074467.1 Malus x domestica MYB19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370487.10.0PREDICTED: protein ODORANT1-like
SwissprotQ50EX62e-92ODO1_PETHY; Protein ODORANT1
TrEMBLA0A498JGV80.0A0A498JGV8_MALDO; Uncharacterized protein
STRINGXP_009370487.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.12e-88myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]