PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr011985.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 144aa MW: 16207.2 Da PI: 7.7923 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.8 | 4.4e-06 | 24 | 46 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F ++ L H++ H Pbr011985.1 24 FECHYCGRKFESSQALGGHQNAH 46 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.39E-7 | 20 | 52 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 21 | 50 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.445 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-6 | 24 | 48 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MKLFGFSVTD DSDQVAMIIE SKKFECHYCG RKFESSQALG GHQNAHKRER QLERMAMLEH 60 VQHLRHPPPN HDHRDQNQLV AASVPISVYS SASTSNINGD HAGVARVPSV VAPRNPHDPY 120 FKRIEQVVPI TDEGNYVDLR LRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr011985.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347778.1 | 1e-104 | PREDICTED: zinc finger protein GIS2-like | ||||
Refseq | XP_009370007.1 | 1e-104 | PREDICTED: zinc finger protein GIS2-like | ||||
TrEMBL | A0A498HLW8 | 4e-77 | A0A498HLW8_MALDO; Uncharacterized protein | ||||
STRING | XP_009347778.1 | 1e-103 | (Pyrus x bretschneideri) | ||||
STRING | XP_009370007.1 | 1e-103 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3903 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58070.1 | 4e-16 | C2H2 family protein |