PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr010042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 353aa MW: 40242.5 Da PI: 9.7542 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.8e-18 | 15 | 60 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G +W++Ia++++ gR++k+c++rw++ Pbr010042.1 15 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 60 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 58.8 | 1.3e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ Pbr010042.1 67 RRPFSEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 110 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.316 | 10 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-15 | 14 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-27 | 16 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.89E-14 | 18 | 59 | No hit | No description |
Pfam | PF13921 | 2.1E-17 | 18 | 78 | No hit | No description |
PROSITE profile | PS51294 | 27.441 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-21 | 69 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-7 | 78 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEDYGDEAKS TGCPRGHWRP AEDEKLRQLV EQYGAQNWNS IAEKLQGRSG KSCRLRWFNQ 60 LDPRINRRPF SEEEEERLLA AHRIHGNKWA LIARLFPGRT DNAVKNHWHV IMARRQREQS 120 KVCGKKSFQD FFNDHSPNSS SISNNFDAGR KLRSQGSSIG FGRNNISTKF FEFQNLNKDR 180 AMFMDSRPTS SLPYNWSFAS MPTTSNKSSS SVDLLGRERR EYINNGNSNY TISELSKGSH 240 PQLVHRRHNP TSSFLYGCYR GSSSNAFGRP TYSSPFGCPG NLADHHINRQ DQHGSTFKEV 300 LPNLYENAST LPKWRVAATT TKFDDHDPQD HVSIDHHKET PFIDFLGVGI SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-31 | 15 | 115 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr010042.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009368396.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A498JXT8 | 0.0 | A0A498JXT8_MALDO; Uncharacterized protein | ||||
STRING | XP_009368396.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 4e-62 | myb domain protein 52 |