PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006526.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 275aa    MW: 30952.5 Da    PI: 7.5358
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006526.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20135184255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  Pbr006526.1 135 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFTTAEDAARAYDKAAIEFRG 184
                  59*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-22135192IPR016177DNA-binding domain
SMARTSM003808.4E-37135198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-32135192IPR001471AP2/ERF domain
CDDcd000181.06E-33135192No hitNo description
PfamPF008472.4E-13135184IPR001471AP2/ERF domain
PROSITE profilePS5103224.737135192IPR001471AP2/ERF domain
PRINTSPR003677.2E-12136147IPR001471AP2/ERF domain
PRINTSPR003677.2E-12158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQYPYKRLKL SDTQPDDPAT LQFQSPPPPH RLTQDQEYAV MVSTLRNVVA GTATSATMDL  60
NSLLSSHATY SPRYNTSTNC HSNTLLAPSD LDTCHVCKIK GCLGCILFPP PPAAHSQDEK  120
GGNYKKGPKK RVKKNYRGVR QRPWGKWAAE IRDPRRATRV WLGTFTTAED AARAYDKAAI  180
EFRGPRAKLN FQFPDTTLLD QESNSTQPQH QQQQQQVVTE QGNKNVEFSR EVETTAILKE  240
NEFWENIGEE EFQWMTMLDF ATDNSSDSGN AHSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-23134191159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-23134191462ATERF1
3gcc_A6e-23134191462ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006526.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324410.0GU732441.1 Malus x domestica AP2 domain class transcription factor (AP2D17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009350374.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLD5L1011e-175D5L101_MALDO; AP2 domain class transcription factor
STRINGXP_009350374.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-34redox responsive transcription factor 1