PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr005884.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | DBB | ||||||||
Protein Properties | Length: 303aa MW: 33219.4 Da PI: 7.2698 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.4 | 5.1e-07 | 4 | 45 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 C+ +++ ++ fC+ ++ lC+ C H+ H++ Pbr005884.1 4 QCDVCNKDDASVFCTADEAALCDACDHRVHHAnklaskhHRF 45 7******99********************6445888886665 PP | |||||||
2 | zf-B_box | 27.4 | 7.1e-09 | 56 | 93 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 ++C+ ++e ++ lfC++++ lC++C l +H+ Ht+ Pbr005884.1 56 PVCDICQERRAFLFCQQDRAILCRECDLPIHNAneHTL 93 79*****************************7689987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.594 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.19E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.1E-4 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.096 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4E-13 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.2E-7 | 56 | 94 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.25E-10 | 56 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MKIQCDVCNK DDASVFCTAD EAALCDACDH RVHHANKLAS KHHRFSLVHP SSKEFPVCDI 60 CQERRAFLFC QQDRAILCRE CDLPIHNANE HTLKHNRYLL TGIKLSATSA LYKSSPPRPT 120 VATASSETAA TDLKKHQPST KKSVSAASPA ISNPNPPPIS VKNSTSTAAV DKRGGNLVGA 180 TSTISEYLIE TLPGWHVEDF LDFSNAPFGF SKADNDMMLS FSEAYPESNL NSFSSENMGM 240 WVRQASQAPP YQYSQMGGGF VGFEETKEGT NMKASNRMWM DDGFTVPQIS PPSVGSKRFR 300 PF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr005884.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009335579.1 | 0.0 | PREDICTED: B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 5e-88 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A498HR97 | 0.0 | A0A498HR97_MALDO; Uncharacterized protein | ||||
STRING | XP_009335579.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-85 | salt tolerance homolog2 |