PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr004500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 168aa MW: 19092 Da PI: 9.5735 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.8 | 3e-51 | 14 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelv +yL++kv + +l++ ++i+evd++k++PwdLp +e yfFs+r+ ky++g+r+nrat sgyWkatg dk++++ +g Pbr004500.1 14 LPPGFRFHPTDEELVLQYLRRKVYSCPLPA-SIIPEVDVCKADPWDLPGD---CAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIVTCrGG 107 79****************************.89***************44...35799*********************************9876589 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLvfy+g+ p+g++tdW+mheyrl Pbr004500.1 108 QVVGIKKTLVFYRGKPPHGTRTDWIMHEYRL 138 99***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-57 | 10 | 144 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.805 | 14 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-27 | 15 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MERINFVKNG VLRLPPGFRF HPTDEELVLQ YLRRKVYSCP LPASIIPEVD VCKADPWDLP 60 GDCAQERYFF STREAKYPNG NRSNRATGSG YWKATGLDKQ IVTCRGGQVV GIKKTLVFYR 120 GKPPHGTRTD WIMHEYRLVL PENPASVAPP EKNATQVSFL FYLVLFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-49 | 12 | 141 | 18 | 148 | NAC domain-containing protein 19 |
3swm_B | 5e-49 | 12 | 141 | 18 | 148 | NAC domain-containing protein 19 |
3swm_C | 5e-49 | 12 | 141 | 18 | 148 | NAC domain-containing protein 19 |
3swm_D | 5e-49 | 12 | 141 | 18 | 148 | NAC domain-containing protein 19 |
3swp_A | 5e-49 | 12 | 141 | 18 | 148 | NAC domain-containing protein 19 |
3swp_B | 5e-49 | 12 | 141 | 18 | 148 | NAC domain-containing protein 19 |
3swp_C | 5e-49 | 12 | 141 | 18 | 148 | NAC domain-containing protein 19 |
3swp_D | 5e-49 | 12 | 141 | 18 | 148 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr004500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001281000.1 | 1e-112 | NAC transcription factor 25-like | ||||
Swissprot | Q9FY93 | 1e-85 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A498HN02 | 1e-111 | A0A498HN02_MALDO; Uncharacterized protein | ||||
TrEMBL | D9ZJA0 | 1e-111 | D9ZJA0_MALDO; NAC domain class transcription factor | ||||
STRING | XP_009349483.1 | 1e-123 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 5e-88 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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