PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr002239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 345aa MW: 39225.8 Da PI: 6.6556 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 7.6e-09 | 14 | 52 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g W R++k+c++rw +yl Pbr002239.1 14 RGLWSPEEDEKLIRYITTHGYG-WL--------QRCGKSCRLRWINYL 52 788*****************99.94........49***********97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.5e-17 | 58 | 102 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ Pbr002239.1 58 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 102 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.388 | 9 | 52 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-25 | 11 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-5 | 13 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-8 | 14 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-16 | 15 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.712 | 53 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-16 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 58 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-12 | 60 | 103 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-25 | 60 | 107 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGWLQRC GKSCRLRWIN YLRPDIRRGR 60 FTPEEEKLII SLHGVVGNRW AHIASHLPGR TDNEIKNYWN SWIKKKIRKP STPSSATTIS 120 PPPSVDHHQH IIPQLGNYNN QLDFAHQDLS PTIKPQAQET LFSSTCPMFM FDTSTTANIE 180 AAPDSYNARG EIFQDMIVTT GLNSSEPWNL NQHQVQAFPP PVTMSFNTTS SSTNNITMNT 240 NYLPPLIENM DNMVPNVDHH HHHHHHQSCN NIDEEGNHDQ IALECLMQRQ ELNEWVVSQQ 300 QCSSFLFWDS VVDDQATVLV GQDHGIAHPT SSNAVQLSSF PPSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 14 | 107 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr002239.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430216 | 6e-54 | KF430216.1 Gossypium hirsutum MYB103 protein (MYB103) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009363397.1 | 0.0 | PREDICTED: transcription factor MYB21-like | ||||
TrEMBL | A0A498JP53 | 0.0 | A0A498JP53_MALDO; Uncharacterized protein | ||||
STRING | XP_009363397.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4112 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 3e-83 | myb domain protein 103 |