PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001145.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 144aa    MW: 16111.2 Da    PI: 7.6991
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001145.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-062446123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++Cg+ F ++  L  H++ H
  Pbr001145.1 24 FECHYCGRKFESSQALGGHQNAH 46
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-72052No hitNo description
Gene3DG3DSA:3.30.160.601.9E-42150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-62448IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.572451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MKLFGFAVKD DSDLVAMIIE SKKFECHYCG RKFESSQALG GHQNAHKRER ELERMAMLEH  60
VQHLRHPPPN RDHRDQNQLV AASVPIFVCS SGSTSNIDGD HAGAARVPSV VAPRNPHGPY  120
FKQIEQVLPN TDEGNYVDLR LRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001145.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347781.11e-104PREDICTED: uncharacterized protein LOC103939422
TrEMBLA0A498HLW87e-77A0A498HLW8_MALDO; Uncharacterized protein
STRINGXP_009347781.11e-104(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.13e-10C2H2 family protein