PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J739300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 264aa    MW: 28330.8 Da    PI: 6.5098
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J739300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.86.1e-25105164157
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--S CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHn 57 
                        +dDgy+WrKYG K+++g ++pr Y+rC+++   gC ++k+v+r ++dp+++++tY geH+
  Pavir.J739300.1.p 105 MDDGYAWRKYGEKSIQGHKNPRFYFRCAYRdelGCGARKQVDRMEDDPSLFHTTYFGEHT 164
                        59***************************99999*************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-2499165IPR003657WRKY domain
PROSITE profilePS5081124.202100168IPR003657WRKY domain
SuperFamilySSF1182901.26E-23101167IPR003657WRKY domain
SMARTSM007742.9E-31105169IPR003657WRKY domain
PfamPF031061.1E-23106164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MATADRASAA CGVMAEAREA AVRLQALLQA TGADPGKREL AEQIIRCIDR ARAAVRGAAG  60
GGSSTTGKTE QGLGLGARPP AGSKRRARRG CGEEARARVV ASSAMDDGYA WRKYGEKSIQ  120
GHKNPRFYFR CAYRDELGCG ARKQVDRMED DPSLFHTTYF GEHTPACPRD DDAAAAQLDR  180
DGHRFVAQGL PLDSFRRPCL PAEGQDPNKE MPASMVEFTA GYCWPLTDQM ANLVSSGVSF  240
GTPGELGSLD AISMEELMDL LWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-18100164367OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J739300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810145.11e-129probable WRKY transcription factor 38
TrEMBLA0A2T7ECH41e-137A0A2T7ECH4_9POAL; Uncharacterized protein
STRINGPavir.J05862.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1869769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.16e-19WRKY DNA-binding protein 46