PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J368500.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 357aa    MW: 39432.4 Da    PI: 7.5177
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J368500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.77.8e-11179218541
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                        k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  Pavir.J368500.2.p 179 KTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 218
                        778************************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.1E-5173240IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.7E-7177223No hitNo description
PROSITE profilePS502178.76177219IPR004827Basic-leucine zipper domain
PfamPF001705.0E-8179218IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.3E-7180221No hitNo description
PROSITE patternPS000360182197IPR004827Basic-leucine zipper domain
PfamPF141441.5E-27275347IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MASGGSLREQ QQEMNISFGM MNSHHGGHHH HQPPSSSSSS SMHAAAASFM SGKEASGAYD  60
HLGELDQALF MYLDHGSGHG ATHQEQRQTL NIFPSQPMHV EPSPKGEISL VLSPAPVGSK  120
QPRSPDHHHH QQAAMEELAG SRRLQQEHHH LQHQPFPSAG AEPAAAGMTK DVKPALANKT  180
LRRLAQNREA ARKSRLRKKA YIQQLESSRI RLAQLEQELH TARAQGVFFP NSSLLADQGV  240
AGKGVPIGGI DGLSSEAAMF DVEYGRWQEE HYRLMYELRA ALQQHLPEGE LQMYVESCLA  300
HHDEMMGIKE GAIKGDVFHL ISGVWRSPAE RCFLWLGGFR PSEVIKVRPR PWIPSL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J368500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669280.0EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651077.10.0putative bZIP transcription factor superfamily protein isoform X1
SwissprotQ52MZ25e-95TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A3L6DZA30.0A0A3L6DZA3_MAIZE; BZIP transcription factor TGA10
STRINGPavir.J32240.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.32e-85bZIP family protein