PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J223500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 199aa    MW: 20126.3 Da    PI: 6.5096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J223500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-181969256
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                       +y+GVr+++ +gr++AeIrdp     r + ++lg+f++ae Aa+a++aa+++++g+
  Pavir.J223500.1.p 19 KYRGVRRRP-SGRYAAEIRDP---A-RkTPIWLGTFDSAEAAARAYDAAARSIRGA 69
                       8********.7*********8...2.35*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.76E-151975No hitNo description
PROSITE profilePS5103221.9181976IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-211977IPR016177DNA-binding domain
SMARTSM003803.5E-321982IPR001471AP2/ERF domain
PfamPF008477.2E-121968IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-291976IPR001471AP2/ERF domain
PRINTSPR003678.3E-82031IPR001471AP2/ERF domain
PRINTSPR003678.3E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MRRARLPPVP APAGDVEVKY RGVRRRPSGR YAAEIRDPAR KTPIWLGTFD SAEAAARAYD  60
AAARSIRGAA ARTNFPPSGP AAAPPPPPPH PATSPAAATS SHSSTVESWS GGAALGPAAA  120
AASATAAGVP RAAPAAEEDC RSYCGSSSSV LCEEGASGAG GDEAAAPPRC SPLPFDLNVP  180
DAEAADEMDW RCDTLLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1919761472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J223500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9660017e-80EU966001.1 Zea mays clone 290693 ethylene-responsive transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801489.14e-87ethylene-responsive transcription factor 3-like
TrEMBLA0A3L6R0S33e-83A0A3L6R0S3_PANMI; Ethylene-responsive transcription factor 3
TrEMBLA0A3L6RRN24e-83A0A3L6RRN2_PANMI; Ethylene-responsive transcription factor 3
STRINGGRMZM2G322672_P013e-61(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.12e-13ethylene response factor 8