PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG743700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 294aa    MW: 30994.9 Da    PI: 6.1097
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG743700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.9e-19101149355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++GVr+++ +g+++AeIrdp +   rkr +lg+f+taeeAa+ ++ a+++l+g
  Pavir.9NG743700.1.p 101 FRGVRFRP-WGKFAAEIRDPAQ---RKRLWLGTFDTAEEAAAVYDDAALRLKG 149
                          8*******.**********943...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.194100157IPR001471AP2/ERF domain
SMARTSM003801.7E-33100163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-28100158IPR001471AP2/ERF domain
PfamPF008473.1E-11101149IPR001471AP2/ERF domain
CDDcd000182.86E-25101157No hitNo description
SuperFamilySSF541712.94E-20101157IPR016177DNA-binding domain
PRINTSPR003673.9E-9101112IPR001471AP2/ERF domain
PRINTSPR003673.9E-9123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSSADSLASG RSRRAGPPLP RPKRVRVYFV DADATDTDSS GDEDERGKRR VREVIHIDVE  60
AAGSAPAALA LVPPKKRPLA SSAAAALARR RAAAAGFRRS FRGVRFRPWG KFAAEIRDPA  120
QRKRLWLGTF DTAEEAAAVY DDAALRLKGC QAVVNFPSAP VSRCARMKPR PRREAAAAFD  180
PEGDDDDALA SPLAQPPPAP LEPEPQAVDA AAPFCPFASP TSLLRYGPDE VAAAPALPAF  240
DFLDGELGDI GAAAAPSKAA AAEFDWLPWW EGEDFVTATR LTPSAGAAAV SVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2099157463ATERF1
3gcc_A6e-2099157463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG743700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278771e-116KJ727877.1 Zea mays clone pUT5970 AP2-EREBP transcription factor (EREB52) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804895.11e-139ethylene-responsive transcription factor CRF4-like
TrEMBLA0A3L6RFM91e-147A0A3L6RFM9_PANMI; Ethylene-responsive transcription factor CRF3-like
STRINGPavir.Ia04256.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.13e-11cytokinin response factor 1