PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG671600.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 498aa    MW: 56179.6 Da    PI: 8.3021
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG671600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.91.5e-2769159188
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                          +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e++  +   +++++++ra tr+gCka++++k+ + gkw vtk++++HnH
  Pavir.9NG671600.3.p  69 DFYSTYARNAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRACDglqSDQKQHERAGTRVGCKAMIMIKNFEPGKWIVTKFVKNHNH 158
                          6*******************************************999998999999********************************** PP

                 FAR1  88 e 88 
                           
  Pavir.9NG671600.3.p 159 G 159
                          5 PP
2FAR190.72e-28207299290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                          fY +YA+  GF+ r+s+  +s+r+++i++r+ vCskeg+re ++kk    + k++r+r+ tr+gCka+++vkk+k+gkw+v+k+e+eHnH
  Pavir.9NG671600.3.p 207 FYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREIRTKKvmtdEGKTKRPRMITRVGCKAMIVVKKMKSGKWMVSKFEKEHNH 296
                          9********************************************99998899999********************************** PP

                 FAR1  88 ela 90 
                          +l+
  Pavir.9NG671600.3.p 297 SLS 299
                          996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-2569159IPR004330FAR1 DNA binding domain
PfamPF031012.4E-26207299IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MSVMEETVIR IASELKPGNG QDSLIELPRA METLVVHDDE VEKLIGLEED TELTPCEGME  60
FESEDAARDF YSTYARNAGF RIRISRYTRS RRDNSIISRR IVCSKEGFHE TRACDGLQSD  120
QKQHERAGTR VGCKAMIMIK NFEPGKWIVT KFVKNHNHGP VPPRKLDSRP VNQDCNPMEK  180
PHTIEVDPVE EPFEGMEFES EEAAKLFYVN YARLNGFRAR ISRYCRSRRD NSIISRQIVC  240
SKEGFREIRT KKVMTDEGKT KRPRMITRVG CKAMIVVKKM KSGKWMVSKF EKEHNHSLSY  300
SKMIPITSNI TSGEVAHFDA KSADHNDVKN EGHCEGTQCN PADSLTVLYN NLCQEAIKFA  360
KEGSVTEEIY HVAVSALKEA AEKVAEVKRS RPTSHRGFIS ESKHDVLHAK TMSTLQCSNE  420
VELKTTSPGS VTLQESASNR LLVPTNILTD SMLYNRGNNV PPSSDFSTNG RQGRHTTEGS  480
LMHFDNIKGT SSQKSQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG671600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9546300.0EU954630.1 Zea mays clone 1474335 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797822.10.0uncharacterized protein LOC112877680
TrEMBLA0A2T7CF420.0A0A2T7CF42_9POAL; Uncharacterized protein
STRINGPavir.Ia03883.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.11e-23FAR1-related sequence 7