PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG653400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 309aa    MW: 33599.2 Da    PI: 4.7537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG653400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.2e-112332731055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Pavir.9NG653400.1.p 233 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 273
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-14226286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12228282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-12232277No hitNo description
PfamPF000103.7E-8233273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MESSEASWHS FDPSVAVEDS EAMAQLLAVQ YFGNEQKQPP PTAMYWPGCQ EADQYYGSAP  60
YYMQQPNSGA GCYDHAGYYG SGTVTMTGDF FVPDEQVADP SFMLDLNLDF EDQEGGGDVP  120
AACKRKLEDQ KGESTACTVP KKKSRSTAVP AQKKGRNAQS KKAQKGSCSR GNQEESNDDG  180
NVQCSGNYPS DDDSLEMTAC SNVRSATRKS SSGGGATRAG RGAATDPQSL YARKRRERIN  240
ERLKILQNLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS SDDMWMFAPI AYNGVNVGLD  300
LKISPPQQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG653400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796821.10.0transcription factor bHLH54-like
TrEMBLA0A2S3IT630.0A0A2S3IT63_9POAL; Uncharacterized protein
TrEMBLA0A2T7CG430.0A0A2T7CG43_9POAL; Uncharacterized protein
STRINGPavir.Ia04640.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-47bHLH family protein