PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG615100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 150aa MW: 16179.1 Da PI: 10.2184 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.5 | 1.9e-10 | 116 | 148 | 1 | 33 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLee 33 e+elk errkq+NRe+ rrsR+ K++e+e+Le Pavir.9NG615100.1.p 116 ERELKGERRKQSNRESTRRSRLHKQQECEKLEA 148 89*****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.0E-7 | 110 | 148 | No hit | No description |
Pfam | PF00170 | 6.9E-8 | 116 | 147 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.41E-8 | 122 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MQQHMMAAAA GAPYGTPMPF HLLPSAKRRK SSSANPSQAT TMQDAAAETG SAAKRSYAGK 60 LSVSTTEMAA ISNARSNLNI GIDLWNNSPI KAETSGQIQI NAAAPCHDAP LSQMDERELK 120 GERRKQSNRE STRRSRLHKQ QECEKLEAN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.35462 | 4e-38 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG615100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792641.1 | 5e-62 | DNA-binding protein EMBP-1-like isoform X2 | ||||
Swissprot | P25032 | 1e-18 | EMBP1_WHEAT; DNA-binding protein EMBP-1 | ||||
TrEMBL | A0A2T7BZD1 | 1e-63 | A0A2T7BZD1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J09275.1.p | 6e-59 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2160 | 36 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 1e-15 | basic region/leucine zipper transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG615100.1.p |