PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG555900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 149aa MW: 15859.8 Da PI: 7.6739 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 33 | 53 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C++ F ++ L H++ H Pavir.9NG555900.1.p 33 CTYCDRKFYTSQALGGHQNAH 53 ******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.41E-7 | 25 | 68 | No hit | No description |
PROSITE profile | PS50157 | 10.97 | 31 | 58 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 33 | 53 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MERRPEQDLD LELTLLHPGA SAAPEEPPGF FLCTYCDRKF YTSQALGGHQ NAHKYERTLA 60 KRRWEIAAMR LHGRSGALVD PPGSAGAAID LPAGAEPAGR ARIKLNTHKA APDPSLAGQS 120 GSLQHSISSG SPERGVGRAD ELDLSLRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG555900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792064.1 | 1e-78 | zinc finger protein 11-like | ||||
TrEMBL | A0A3L6S7E6 | 1e-78 | A0A3L6S7E6_PANMI; Zinc finger protein 1-like | ||||
STRING | Pavir.J17021.1.p | 1e-101 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 9e-15 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG555900.1.p |