PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG444400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 279aa    MW: 31405.1 Da    PI: 9.6528
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG444400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.5e-19141228196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k++++s+v++  +l lp +f++++   +++++ ++lede+g +++  +   +k+ +  l++GW++F+  ++L++gD++vF+l+++++f
  Pavir.9NG444400.1.p 141 FVKTMVRSHVSSCFWLGLPGSFCKKNL--PRSEFRMVLEDEDGVEFDAVY--IGKRTG--LSGGWRGFAMHHNLEDGDSLVFELTEHDRF 224
                          89*********************9995..457789***************..555544..***********************9987888 PP

                          ..EEEE CS
                   B3  91 elvvkv 96 
                            ++ +
  Pavir.9NG444400.1.p 225 --KIYI 228
                          ..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-23134230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-20135231IPR015300DNA-binding pseudobarrel domain
CDDcd100175.24E-26139230No hitNo description
PROSITE profilePS5086312.464141232IPR003340B3 DNA binding domain
PfamPF023628.2E-18141229IPR003340B3 DNA binding domain
SMARTSM010191.3E-20141232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MATKASSAAS GAAYEEQRRK RVLENLKHLE DLGISEMSKS LLQAARLHKQ DKDGVRASPK  60
PRKKFDATEV RRSSRAKPTV SYKDDFGELD TFLRRKRRSG GTNADPGREY TGRVSSYEQQ  120
QRAFRRAEKL QDGLDPNNPS FVKTMVRSHV SSCFWLGLPG SFCKKNLPRS EFRMVLEDED  180
GVEFDAVYIG KRTGLSGGWR GFAMHHNLED GDSLVFELTE HDRFKIYIIK AMDEDDVEEA  240
ESDDKNASGG TKEESAQEDS PAAEPPKGAK RRKLRGRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265271PKGAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG444400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809297.10.0B3 domain-containing protein Os05g0481400-like isoform X2
SwissprotQ5KQI41e-129Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A2S3HB280.0A0A2S3HB28_9POAL; Uncharacterized protein
STRINGPavir.J00951.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-47B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]