PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG223700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 290aa    MW: 30666.2 Da    PI: 9.2084
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG223700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.54.2e-191150342
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         i n+s r  tf kRr+g++KKA+EL +LCd++++v+++++
  Pavir.9NG223700.1.p 11 IANDSTRRATFKKRRKGLMKKASELATLCDVDACVVVYGE 50
                         89************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-24160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-24185IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.516150IPR002100Transcription factor, MADS-box
CDDcd002661.59E-33285No hitNo description
PRINTSPR004043.5E-11323IPR002100Transcription factor, MADS-box
PfamPF003195.7E-191150IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MARKKVTLQW IANDSTRRAT FKKRRKGLMK KASELATLCD VDACVVVYGE GESAPEVWPD  60
VAKAARVLAR FKAMPELDQC KKMMDMEGFL SQLIDKHREQ LHKARRENRE RETTLLLHDA  120
IAGRRPGGLA GLSVEEIASL GWMVENLLHR VRDAIERLQG KGPPQGQEAP SSSAVTAALQ  180
LQPPQVGGLP LVPYGGHGDV MMQAPPPPHP QAAWLMEVAR AGGDLGALVY SGFGGGRGSF  240
GAGGAAAAGT SNAAAAGADM PPPPPQQQLG NMGAGFAWTD PAGLPFPPM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLQWIANDSTRRATFKKRR
22125KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG223700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275260.0KJ727526.1 Zea mays clone pUT5386 MADS transcription factor (MADS66) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791603.11e-138agamous-like MADS-box protein AGL80
TrEMBLA0A1E5ULN71e-137A0A1E5ULN7_9POAL; Agamous-like MADS-box protein AGL80
STRINGPavir.J14267.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-33AGAMOUS-like 80