PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG197500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 314aa    MW: 35698.2 Da    PI: 9.6474
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG197500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.6e-1929116298
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          fkvl     + ++rlvlp k a +  gk ++   ++le++sg +++v++   k+sgr+vl++GW+ F +a+gLk  Df+vFk+dg  +  
  Pavir.9NG197500.1.p  29 FKVL--IGDF-RKRLVLPDKLALHLRGKIAR--SIKLESRSGHTFDVQV--AKNSGRVVLQSGWELFISAHGLKKLDFLVFKYDGICR-- 109
                          5555..4444.457********888777555..5***************..*******************************998443.. PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                          ++v +f+
  Pavir.9NG197500.1.p 110 MKVLIFD 116
                          5888887 PP
2B3474.6e-152293111698
                          EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-...TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt...kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++++ ++ e++ +      ++ + + +g+sWev ++ +  sg++ ++   kGWk+F+ +n+L++gD ++F+l ++++ +++v+++r
  Pavir.9NG197500.1.p 229 MRFSGEYSEAYLLF---REKMLMLHCHGKSWEVMCRSQVPSGQCKFQklcKGWKRFACDNNLQVGDLCLFELLETKKYTMNVHIVR 311
                          55556666666333...225889999*********996666664444444**********************999********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-2021120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-2023125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.01225118IPR003340B3 DNA binding domain
CDDcd100171.74E-1826116No hitNo description
PfamPF023626.9E-1728116IPR003340B3 DNA binding domain
SMARTSM010191.5E-828118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-18206311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-17208311IPR015300DNA-binding pseudobarrel domain
CDDcd100176.59E-14211311No hitNo description
PROSITE profilePS5086311.35214313IPR003340B3 DNA binding domain
SMARTSM010192.2E-6217313IPR003340B3 DNA binding domain
PfamPF023621.2E-13223312IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGKPRKGWRE KDASDHWNNQ TDDQCKRFFK VLIGDFRKRL VLPDKLALHL RGKIARSIKL  60
ESRSGHTFDV QVAKNSGRVV LQSGWELFIS AHGLKKLDFL VFKYDGICRM KVLIFDPSGC  120
EKVPPCFFTK NAINGRQRKE ESFDISSNYA KVANISSSSC SPSESSGGST SSEEHEAHSV  180
PSYILPRGTS LTNVQNKKLE EKVQAICSEI PIYVCVMKKT NISGEHQHMR FSGEYSEAYL  240
LFREKMLMLH CHGKSWEVMC RSQVPSGQCK FQKLCKGWKR FACDNNLQVG DLCLFELLET  300
KKYTMNVHIV RGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG197500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679254.11e-156putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A2T7C3N71e-179A0A2T7C3N7_9POAL; Uncharacterized protein
STRINGPavir.Ia01200.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-22B3 family protein