PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG196900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 211aa MW: 23588.2 Da PI: 5.7675 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.9 | 4.4e-19 | 39 | 119 | 13 | 98 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +++p +fa++++g s ++l+++ g++W +++ ++ ++++l++GWkeFv+a+ ++egD ++Fk++g s+f v +f+ Pavir.9NG196900.1.p 39 TETMSIPGRFANNFNGH--ISEVVSLKSPGGETWGIRV-GNNANDEVMLQSGWKEFVSAHSIEEGDYLLFKYSGVSSF--DVLMFD 119 4569*******888666..6779***************.4555556***************************99999..777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-23 | 24 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-23 | 26 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.833 | 27 | 121 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.52E-20 | 28 | 119 | No hit | No description |
SMART | SM01019 | 1.4E-10 | 30 | 121 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-17 | 39 | 118 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MQNLDKNCRV CMEWQEHCYW SHMADDQKHF FKPMVGDFTE TMSIPGRFAN NFNGHISEVV 60 SLKSPGGETW GIRVGNNAND EVMLQSGWKE FVSAHSIEEG DYLLFKYSGV SSFDVLMFDS 120 SGCEKASPHF AQNHGSERIE GSAGVEGARR HGSHKSKGGK DCTPQLLPTD DDEDEDGDLE 180 LAVQRNTSRS IPKPCKRKLC RDIEQVHCRS * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7446 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG196900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797496.1 | 1e-123 | B3 domain-containing protein Os03g0622200-like | ||||
Swissprot | Q10GM3 | 5e-77 | Y3222_ORYSJ; B3 domain-containing protein Os03g0622200 | ||||
TrEMBL | A0A2T7C3L6 | 1e-123 | A0A2T7C3L6_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8I1F9 | 1e-124 | A0A2T8I1F9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01266.1.p | 1e-130 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 7e-28 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG196900.1.p |
Publications ? help Back to Top | |||
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