PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG191700.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 128aa    MW: 14386 Da    PI: 6.263
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG191700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.66.1e-1161123171
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 
                          ++Yn+YA++vGF+vr+sk+k++  +g+  ++++v  ++g+re+++++       ++ t tgC+a+++ + +
  Pavir.9NG191700.3.p  61 EMYNTYAERVGFNVRRSKTKHR-LDGSLRQKHLVYCCQGYRENDSSQ-------KNITMTGCDARVQFSIS 123
                          58***************98876.999999999999999999998766.......8899*******998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-861123IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MEDPHSLEID VGGGRPEEEQ QIAQVGSVEN KVPNEVLDKS KQNLTTPEVG MSSESEKKAY  60
EMYNTYAERV GFNVRRSKTK HRLDGSLRQK HLVYCCQGYR ENDSSQKNIT MTGCDARVQF  120
SISREGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG191700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020406333.17e-31protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3L6Q9Q98e-55A0A3L6Q9Q9_PANMI; Uncharacterized protein
STRINGSb04g005390.12e-34(Sorghum bicolor)
STRINGSb06g025940.14e-36(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.29e-10FAR1 family protein