PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG163900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 140aa MW: 14831.3 Da PI: 9.3938 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 71.8 | 9.5e-23 | 48 | 105 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT.EEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk.vveitYegeHnh 58 +Dgy+W+KYGqK +k+ + rsY+rC +++C +kkkve +d++ ++ ++Yeg H+h Pavir.9NG163900.1.p 48 EDGYEWKKYGQKFIKNIQKIRSYFRCRHRQCGAKKKVEWHPRDTSgALRVVYEGAHQH 105 7***************************************999874789********* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 18.142 | 42 | 108 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.4E-25 | 42 | 108 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-21 | 43 | 108 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-24 | 47 | 107 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-21 | 48 | 105 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MASSSSSQPN AIGSAGDRNQ EKEAEAVEVA AAEASSEAGN GSQLVMPEDG YEWKKYGQKF 60 IKNIQKIRSY FRCRHRQCGA KKKVEWHPRD TSGALRVVYE GAHQHGSPPS SSAAAAAAAA 120 AASNKYELGA QYFGGARPQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG163900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970633 | 1e-80 | EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791517.1 | 2e-64 | WRKY transcription factor 23-like isoform X3 | ||||
TrEMBL | A0A3L6S831 | 1e-68 | A0A3L6S831_PANMI; Putative WRKY transcription factor 33 | ||||
STRING | Si038001m | 2e-55 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10158 | 34 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 5e-14 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG163900.1.p |