PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG048200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 313aa MW: 32344.9 Da PI: 8.1088 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.1 | 7.7e-33 | 136 | 193 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+ dp+vv++tYeg+H h+ Pavir.9NG048200.1.p 136 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSADPSVVITTYEGQHCHH 193 8******************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-33 | 120 | 193 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-28 | 127 | 194 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.021 | 130 | 195 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-38 | 135 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-25 | 136 | 193 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MAGAAGDGTE GVGGEWPFAG ADAFAEYSSS VFAELGWPGG LAAGAGELPV LDLPEAAAPP 60 AEATRLEEVV APARSGDAAA SSSSSGDGDG AAPGSYDGKP AAEPASTKPA AAKKGLKRAR 120 QPRFAFMTKS EIDHLEDGYR WRKYGQKAVK NSPFPRSYYR CTNSKCTVKK RVERSSADPS 180 VVITTYEGQH CHHIGSFQRG GAVGAAAAHI HRSAAAVALA EQMSPFIPPQ QLYALPRLHP 240 QSSPSSETVV SPASTSISLQ QLNGSGDEQR RTSFSPRVSS PARSPTTPSP AIAVEKAGGL 300 LDDMVPHGVR HG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-26 | 126 | 194 | 8 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 3e-26 | 126 | 194 | 8 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG048200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058608 | 0.0 | KU058608.1 UNVERIFIED: Panicum miliaceum WRKY8-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798563.1 | 1e-149 | probable WRKY transcription factor 57 | ||||
TrEMBL | A0A1E5W3W4 | 1e-153 | A0A1E5W3W4_9POAL; Putative WRKY transcription factor 57 | ||||
STRING | Pavir.J37837.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 4e-48 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG048200.1.p |