PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9KG429900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 234aa MW: 24451.5 Da PI: 9.3616 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 24.3 | 6.8e-08 | 42 | 76 | 12 | 46 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +NRe+ArrsR R + ++ L+ ++ L eN + Pavir.9KG429900.1.p 42 SNRESARRSRMRNQRHLDDLTAQAAHLRRENAHVA 76 8******************************8655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.9E-4 | 34 | 95 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.81E-7 | 40 | 83 | No hit | No description |
CDD | cd14702 | 1.94E-13 | 41 | 84 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.5E-6 | 41 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MASSSGSGSG SSGSLSATLA AAAGTEEELR AHGAALRQAD LSNRESARRS RMRNQRHLDD 60 LTAQAAHLRR ENAHVATALG LTTHGLLAVD AKNAIFRTQA AELAARLASL NDILACMNTN 120 AAAVAAARAA PVLCAGPCRL PLCGPCVCGA PREIRPHAAP SSPPWPEPAP GPCAMACREG 180 RRAQGGRPRR EGRRGGQRRE QEGEADSFIG NGWPLFPGTW AFNLEAHAKW ESK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9KG429900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067356 | 1e-108 | BT067356.2 Zea mays full-length cDNA clone ZM_BFc0022C11 mRNA, complete cds. | |||
GenBank | BT085301 | 1e-108 | BT085301.2 Zea mays full-length cDNA clone ZM_BFb0368K21 mRNA, complete cds. | |||
GenBank | BT085353 | 1e-108 | BT085353.2 Zea mays full-length cDNA clone ZM_BFc0002B07 mRNA, complete cds. | |||
GenBank | HQ858796 | 1e-108 | HQ858796.1 Zea mays clone UT1860 bZIP transcription factor mRNA, partial cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4459 | 33 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 5e-21 | basic leucine-zipper 44 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9KG429900.1.p |