PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG411800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GeBP

Protein Properties

Length: 361aa MW: 38711.6 Da PI: 6.0061

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG411800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	104.1	1.1e-32	56	155	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqk 87 lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++k+qlveKirrLK+K++++v++ + g ++f+++h+q Pavir.9KG411800.1.p 56 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLHTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAAFTFRSPHEQA 145 79***********************8867778***********************************8889********* PP DUF573 88 ifelskkiWg 97 ife+++ iW+ Pavir.9KG411800.1.p 146 IFEIARTIWR 155 *******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.9E-30	57	154	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MVSSSFPDAD AYGNGDSDDL DFPVDPHPTP VFSSPAAAPA SASAAPPAGA GERRPLFQRL 60 WTDEDEIVIL RAFAEFTAQR GTSFASHQYD TTPFYEDMRR RLHTGFTKNQ LVEKIRRLKR 120 KYRNCVERLR VAGAAFTFRS PHEQAIFEIA RTIWRPDSDK HGRDSDDEAA ANAHDGPLAL 180 DANGGDSTKS PTSRPRRGGR RRRTADFPAD AAAETLALPP PPMPVMPEDA LPSFPAAGMP 240 AMDAGVGVGS ISMDPAAGLP AAMSAAVTGG STAENPILAA LFKEMVRAML SIGGGVTAAP 300 LGLEPPPAIA GMPMEGEKWR QQRIRELEVY LRRIDLLQDQ ARAALEELRS APQGRGGMNT 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MVSSSFPDAD AYGNGDSDDL DFPVDPHPTP VFSSPAAAPA SASAAPPAGA GERRPLFQRL  60
WTDEDEIVIL RAFAEFTAQR GTSFASHQYD TTPFYEDMRR RLHTGFTKNQ LVEKIRRLKR  120
KYRNCVERLR VAGAAFTFRS PHEQAIFEIA RTIWRPDSDK HGRDSDDEAA ANAHDGPLAL  180
DANGGDSTKS PTSRPRRGGR RRRTADFPAD AAAETLALPP PPMPVMPEDA LPSFPAAGMP  240
AMDAGVGVGS ISMDPAAGLP AAMSAAVTGG STAENPILAA LFKEMVRAML SIGGGVTAAP  300
LGLEPPPAIA GMPMEGEKWR QQRIRELEVY LRRIDLLQDQ ARAALEELRS APQGRGGMNT  360
*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG411800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT064599	1e-176	BT064599.1 Zea mays full-length cDNA clone ZM_BFc0188M08 mRNA, complete cds.
GenBank	EU972116	1e-176	EU972116.1 Zea mays clone 375368 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794014.1	0.0	probable transcription factor At3g04930
TrEMBL	A0A2T7CC96	0.0	A0A2T7CC96_9POAL; Uncharacterized protein
TrEMBL	A0A2T8I4R3	0.0	A0A2T8I4R3_9POAL; Uncharacterized protein
STRING	Pavir.J23796.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	2e-32	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pavir.9KG411800.1.p