PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG095500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 274aa    MW: 30807.4 Da    PI: 10.264
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG095500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.4e-2134122299
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          fkvl     + ++rlvlp k a ++ gk ++   ++le++sg +++v++   k+sgr+vl++GW++Fv+a+gLk  Df+vFk+dg s+  
  Pavir.9KG095500.1.p  34 FKVL--IGDF-RKRLVLPDKLALHFRGKIAR--SIKLESRSGHTFDVQV--AKNSGRVVLQSGWESFVSAHGLKMLDFLVFKYDGISR-- 114
                          5555..4444.457********999888555..5***************..*******************************988544.. PP

                          .EEEEE-S CS
                   B3  92 lvvkvfrk 99 
                          ++v +f++
  Pavir.9KG095500.1.p 115 MKVLIFDH 122
                          59999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-2226125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2228128IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.88730123IPR003340B3 DNA binding domain
CDDcd100179.67E-2131121No hitNo description
PfamPF023623.6E-1933122IPR003340B3 DNA binding domain
SMARTSM010192.7E-1133123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MFGSKMGKPR KGWREKDASD HWNNQTDDQC KRFFKVLIGD FRKRLVLPDK LALHFRGKIA  60
RSIKLESRSG HTFDVQVAKN SGRVVLQSGW ESFVSAHGLK MLDFLVFKYD GISRMKVLIF  120
DHSGCEKPLI CSVTKNSING RKRKEESFDI SSNYAKVANI ISSSCSPFES SGGSTSSEED  180
EARSIPSCIL PRGTSLTNVQ NKKLEKKVQA ICSEIPIYGC VIKKTNISGR SQNMRFTGEY  240
SDAYLPFMKR TLTLHRHGKS WDVMCHLQVP SGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG095500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679254.11e-114putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A2T7C3N71e-154A0A2T7C3N7_9POAL; Uncharacterized protein
TrEMBLA0A3L6TN321e-145A0A3L6TN32_PANMI; Uncharacterized protein
STRINGPavir.Ia01200.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-17B3 family protein