PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG095400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 315aa    MW: 35722.8 Da    PI: 9.6472
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG095400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-17361161299
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           ++rl lp k a ++ gk ++s  ++le+ +g +++v++  +k+sgr  l++GW+ Fv+a+gLk  Df+vFk+dg s+  ++v +f++
  Pavir.9KG095400.1.p  36 FHKRLFLPDKLALHFRGKIARS--IKLES-HGHTFDVQV--EKNSGRLALQSGWETFVSAHGLKMLDFLVFKYDGISR--MKVLIFDA 116
                          4568********9998886665..99887.*********..*******************************988544..59999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-2022119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-2023124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.53325117IPR003340B3 DNA binding domain
CDDcd100174.40E-1826115No hitNo description
SMARTSM010191.2E-728117IPR003340B3 DNA binding domain
PfamPF023621.3E-1529116IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-7239313IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-7239313IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.302245314IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MRKPGNGCKE KGACHFWNAY TDDQDKHFFK VLIGDFHKRL FLPDKLALHF RGKIARSIKL  60
ESHGHTFDVQ VEKNSGRLAL QSGWETFVSA HGLKMLDFLV FKYDGISRMK VLIFDATGCE  120
KVLPCFVTEN AISGRQREEE SIDISSNYTN LPMKTPEAKK KAWKQRDGRK IANISSSCSP  180
SKSSGGSTSS EEHESHSVGS TSSEEHESHS VPSYILPRRT SLTDVQKKQL KEKIGAICSE  240
IPIYVCVMKK TNVSGEHQSM RFSGEYSEAY LPFRDRTLML HCHGKSWEVM CRIRVRRGHR  300
NFQNLCKGWK PVCT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG095400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679254.11e-154putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A3L6S8B71e-178A0A3L6S8B7_PANMI; Uncharacterized protein
STRINGPavir.Ia01199.1.p1e-170(Panicum virgatum)
STRINGPavir.Ib03968.1.p1e-170(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-19B3 family protein