PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG081900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 347aa MW: 38915.1 Da PI: 7.5339

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG081900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.9	1.1e-19	39	120	13	99
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +++p +fa++++g s ++l+++ g++W++ + ++ ++++l++GWkeFv+a+ ++egD ++Fk++g s+f v +f++ Pavir.9KG081900.1.p 39 TETMSIPGRFANNFNGH--ISEVVSLKSPGGKTWSIGV-GNNANDEVMLQSGWKEFVSAHSIEEGDYLLFKYSGVSSF--DVLIFDS 120 4569*****888666..6779***********.4555556*************************99999..9999886 PP
2	B3	48.9	1.2e-15	238	337	1	99
EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f++v+ ps+v + g + ++ +fa+++ g +++ +++l+ s +W v+++ ++ s++ + ++GW +Fv +ngL D+++F+l++ Pavir.9KG081900.1.p 238 FVQVMHPSHVRGKksGVVAISSEFAAKYLGATRG--EIILQRvGSKGKWHVRYSCNRFSRG-LVGRGWCGFVGDNGLLNHDVCLFELIKG 324 6677777777654448899*******666555..68888857779**98888887.5688********************77 PP .SEE..EEEEE-S CS B3 88 .sefelvvkvfrk 99 ++ +++v+v+rk Pavir.9KG081900.1.p 325 kQRPTMTVHVLRK 337 6999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.5E-23	24	123	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-23	26	126	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	15.016	27	121	IPR003340	B3 DNA binding domain
CDD	cd10017	2.42E-21	28	119	No hit	No description
SMART	SM01019	1.2E-11	30	121	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.9E-17	39	119	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.49E-18	232	336	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	7.4E-20	232	336	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.03E-14	236	333	No hit	No description
SMART	SM01019	1.0E-6	238	338	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-13	238	337	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.827	255	338	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005773	Cellular Component	vacuole
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MQNLDKNCRV CMEWQEHCYW SHMADDQKHF FKPMVGDFTE TMSIPGRFAN NFNGHISEVV 60 SLKSPGGKTW SIGVGNNAND EVMLQSGWKE FVSAHSIEEG DYLLFKYSGV SSFDVLIFDS 120 SGCEKTAPHF AQNHGCERIE GSAGVEGAQL ELAVQRNTSR SIPNPCKRKL CRDIEQVRCH 180 VKDDEDDLEV DHEGDTPAAK TGYYFCKNGP VSAYHLTEEE REEISSVRIP AQPTNPVFVQ 240 VMHPSHVRGK KSGVVAISSE FAAKYLGATR GEIILQRVGS KGKWHVRYSC NRFSRGLVGR 300 GWCGFVGDNG LLNHDVCLFE LIKGKQRPTM TVHVLRKVRD RFVLLR*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MQNLDKNCRV CMEWQEHCYW SHMADDQKHF FKPMVGDFTE TMSIPGRFAN NFNGHISEVV  60
SLKSPGGKTW SIGVGNNAND EVMLQSGWKE FVSAHSIEEG DYLLFKYSGV SSFDVLIFDS  120
SGCEKTAPHF AQNHGCERIE GSAGVEGAQL ELAVQRNTSR SIPNPCKRKL CRDIEQVRCH  180
VKDDEDDLEV DHEGDTPAAK TGYYFCKNGP VSAYHLTEEE REEISSVRIP AQPTNPVFVQ  240
VMHPSHVRGK KSGVVAISSE FAAKYLGATR GEIILQRVGS KGKWHVRYSC NRFSRGLVGR  300
GWCGFVGDNG LLNHDVCLFE LIKGKQRPTM TVHVLRKVRD RFVLLR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7446	0.0	callus

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00468	DAP	Transfer from AT4G33280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG081900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797496.1	0.0	B3 domain-containing protein Os03g0622200-like
Swissprot	Q10GM3	1e-133	Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBL	A0A2T7C3L6	0.0	A0A2T7C3L6_9POAL; Uncharacterized protein
STRING	Pavir.Ib03973.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP562	34	179

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-36	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG081900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]