PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG002100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 288aa    MW: 32428.7 Da    PI: 6.5041
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG002100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY604.4e-19135199359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.....SSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.....edpkvveitYegeHnhe 59 
                          Dg +WrKYGqK+++++++prsYYrCt++   +C+++k v++++     ++p + +++Y+g+H+++
  Pavir.8NG002100.1.p 135 DGRQWRKYGQKHINKAKHPRSYYRCTYSkeqDCKATKTVQQQDectgtDNPVMYTVIYHGQHTCK 199
                          999************************98889********98633332589999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-21126199IPR003657WRKY domain
SuperFamilySSF1182902.75E-20128199IPR003657WRKY domain
SMARTSM007746.8E-28133200IPR003657WRKY domain
PROSITE profilePS5081114.183135175IPR003657WRKY domain
PfamPF031065.3E-22135199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKHHNSRHLP QSSPSDHPSF ASDHGSAMKE IARGQSLVTQ LRAIVLPALQ ADQRCELVAQ  60
MFQNILDCSS KAITELQLQH QSDDDALVDD KKRARRISSD DCTKEEGATA NPRHQHKRRR  120
SDDLVSLETP VPHYDGRQWR KYGQKHINKA KHPRSYYRCT YSKEQDCKAT KTVQQQDECT  180
GTDNPVMYTV IYHGQHTCKD NNGVDSGTDE SETNTQSSSD SRSSISTTST DPCDHQTSLG  240
DNKLIGKSAD LVTKSLYEPL NMNPFAPLDL DYWELDALLR FQLEPDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-141351991069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG002100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805419.10.0probable WRKY transcription factor 62
TrEMBLA0A2T7E4I70.0A0A2T7E4I7_9POAL; Uncharacterized protein
STRINGPavir.Ha01933.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-21WRKY DNA-binding protein 70