PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.8NG001800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 168aa MW: 17812.8 Da PI: 4.5229 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74.7 | 1.1e-23 | 17 | 79 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE...EEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv...veitYegeHnhe 59 Dgy+WrKYGqK+++g+ ++rsYYrCt + gCp+k+ v+r+++ + + +++Y geH+++ Pavir.8NG001800.1.p 17 DGYQWRKYGQKQIEGAMYARSYYRCTRSaeqGCPAKRTVQRNDDGGAApaeYTVVYMGEHTCT 79 9*************************988889**********96544322279********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 1.07E-21 | 10 | 79 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.4E-24 | 11 | 79 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-28 | 15 | 80 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-24 | 17 | 78 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.546 | 17 | 58 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MSGGTSSVVI TSVPDLDGYQ WRKYGQKQIE GAMYARSYYR CTRSAEQGCP AKRTVQRNDD 60 GGAAPAEYTV VYMGEHTCTP NDSMEAPFIL ETTAAAVVPV ASSAGGSCCS STSWAPAPAA 120 ASSLQELEDF TGPIRSPVHI AAADGWTIDH FLLLQLANDQ PVSYFSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-17 | 6 | 78 | 1 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.8NG001800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058632 | 1e-100 | KU058632.1 UNVERIFIED: Panicum miliaceum WRKY30-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977390.1 | 5e-65 | probable WRKY transcription factor 58 | ||||
TrEMBL | A0A2T7E4I1 | 2e-69 | A0A2T7E4I1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J20374.1.p | 1e-122 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5760 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 2e-16 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.8NG001800.1.p |