PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG188100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 313aa    MW: 32052.5 Da    PI: 8.4589
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG188100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.7e-33134191259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+ dp+vv++tYeg+H h+
  Pavir.8KG188100.1.p 134 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSADPSVVITTYEGQHCHH 191
                          8******************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-33118191IPR003657WRKY domain
SuperFamilySSF1182903.4E-28125192IPR003657WRKY domain
PROSITE profilePS5081130.021128193IPR003657WRKY domain
SMARTSM007742.4E-38133192IPR003657WRKY domain
PfamPF031061.0E-25134191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAGAAGDGAE GVGGEWPFAG ADAFAEYPSS VFAELGWPGG LAAGAGELPA AAAAPPAEAT  60
RLEEAVAPAR SGDAAASSSS SGDGDGDGAA PGSYDRKPAA ETASTKPAAA KKGQKRARQP  120
RFAFMTKSEI DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT NSKCTVKKRV ERSSADPSVV  180
ITTYEGQHCH HIGSFPRGGG VGAAAAAAHI HRSVAAVALA EQMSSFIPPQ QLYGLPPLRP  240
QGSPSSETVV SPASTSLQQL NGSGDELQRT SFSPRASPAR SPTTTTPSPA ISVVEKAGGL  300
LDDMVPHGVR HG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26124192876Probable WRKY transcription factor 4
2lex_A3e-26124192876Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG188100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586080.0KU058608.1 UNVERIFIED: Panicum miliaceum WRKY8-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798563.11e-148probable WRKY transcription factor 57
TrEMBLA0A2T7C0S11e-148A0A2T7C0S1_9POAL; Uncharacterized protein
STRINGPavir.J37837.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.24e-44WRKY DNA-binding protein 57