PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG057800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 397aa    MW: 41364.2 Da    PI: 8.1695
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG057800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.7e-11129191163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          eke kr rr  +NRe+Ar   +R++   +eL++kv+ L+++N+ +kke ++ ++e+ +lk  +
  Pavir.8KG057800.1.p 129 EKEAKRLRRVLSNRESARQTILRRQSIRDELTRKVADLSSQNENMKKEKDMVTQEYLSLKEAN 191
                          89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-5127194No hitNo description
PfamPF001704.1E-9129192IPR004827Basic-leucine zipper domain
SMARTSM003385.7E-12129193IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.185131194IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.34E-7133189No hitNo description
CDDcd147021.22E-13134184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSDDSDGQRP CRRGVTGDVE LDAAMALADM AGAESQQPRP GAPAPHRPAA AAHQAAAAAA  60
EDEEEKLAST RLSLELGKVG IQSAASPCSS SSSAGHPHHH HPHTAPAPAP AAAATGYGPR  120
PRHMLTEAEK EAKRLRRVLS NRESARQTIL RRQSIRDELT RKVADLSSQN ENMKKEKDMV  180
TQEYLSLKEA NKQLKEQVAR TTKKAPAAAA AVPIQQAAAG EAMAAPAAAS PPATPPRPGF  240
LYAAAPPAVP YVWGSWPPGP GYEHHHHGGS PPPICLPPCA WYYPVVADPR GSPTSAYPPP  300
PQQQQAQAAA FQPAEPAGSG GGATAEEDTD DDPCSLTLGL DVADRRSAPI SIDARGGAGP  360
SGRDKAATAA EARKRRKELT KLKHMHAAGR PGGEPC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372377RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG057800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828038.11e-152uncharacterized protein LOC112903047
TrEMBLA0A2T8I7J71e-151A0A2T8I7J7_9POAL; Uncharacterized protein
STRINGPavir.Hb01810.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31653475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.13e-16bZIP family protein