PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG043200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 436aa    MW: 50287.2 Da    PI: 6.8482
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG043200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.32.1e-23117213186
             trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                          +Wt+ +v++Li+a+++++++ + +           +kk++W+++sk++ er +++sp+qC++k+++lnkryk+++++ +++ +++++ + 
  Pavir.8KG043200.1.p 117 KWTDTMVKLLITAVSYIGDDHGPDLggrrrnftimQKKGKWKAISKVLGERECHVSPQQCEDKFNDLNKRYKRLTDILGRGiACNVVANP 206
                          7**************99888886533345567777**********************************************89******9 PP

             trihelix  80 pyfdqle 86 
                          +++d+++
  Pavir.8KG043200.1.p 207 ALLDSMN 213
                          9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.9E-18115239No hitNo description
CDDcd146860.00711387425No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEGNNVPRES MMQGAPCGSL DLHGNSMQTH APNSGKQIFN NSQMPGTFTM TINRATEPVD  60
FPGFQFKEHE KCDKNHHHHN HHSMNSMNDD EEHDMIEDAT DTPNSKGKKG SPWHRMKWTD  120
TMVKLLITAV SYIGDDHGPD LGGRRRNFTI MQKKGKWKAI SKVLGERECH VSPQQCEDKF  180
NDLNKRYKRL TDILGRGIAC NVVANPALLD SMNHLSDKKK EDAKKILSSK HLFYEQMCSY  240
HNNNREYLPE DHALQHSLLL ALRSKAEHDP RRDTSGNDDE DDQSVDSDYE ENDEEQHHVH  300
ANMRESSTHK RTRHGDAALV TSSFHKGIEK SGPIDIEVDT NKAFPGGTNW SLMQQDLASQ  360
TLEVQKRLLQ IEEKDLELKR QRLKWDRYRK KKDREIERME MENQQMMIEN KHLANELRQK  420
EIELELKIKG QANNP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379390RQRLKWDRYRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.211510.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG043200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826713.10.0uncharacterized protein LOC112902031
TrEMBLA0A2S3ICF40.0A0A2S3ICF4_9POAL; Uncharacterized protein
TrEMBLA0A2T7CK810.0A0A2T7CK81_9POAL; Uncharacterized protein
STRINGPavir.Hb01835.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.15e-86sequence-specific DNA binding transcription factors