PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG023300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 283aa    MW: 31633.3 Da    PI: 5.8241
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG023300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY50.44.5e-16153198346
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTT CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpk 46 
                          D ++WrKYGqK+++g ++p++YYrC+++  +C+++k +e++++++ 
  Pavir.8KG023300.1.p 153 DDHQWRKYGQKNINGRQHPKNYYRCAYRerNCSATKTIEQQEQNNA 198
                          99*************************999**********998764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-19137223IPR003657WRKY domain
SuperFamilySSF1182905.36E-16145223IPR003657WRKY domain
SMARTSM007746.6E-20151224IPR003657WRKY domain
PfamPF031068.5E-21153223IPR003657WRKY domain
PROSITE profilePS5081115.101153213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDRKSSLTLR PCCHGSESEM MLMMESMRSQ QELLMQLRAL VLPLLHGVHD TSADIAAQLF  60
DDVIGCNVSV ASMLEGCLIM STTGDDDDGP AVELVVDDKS KKSSLARKRN STITGDRTTD  120
QEQAKPNNSA GQKRRRNDKQ RSRALVTHVP HYDDHQWRKY GQKNINGRQH PKNYYRCAYR  180
ERNCSATKTI EQQEQNNAGT SSAIAGVENA KYTVVYYGDH TCKDHNISMV QAPQQQPVNM  240
DLQNGEMAQA TANVQEPETD LDLPALLEVF DNSLVEWDDG KM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG023300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805423.11e-148probable WRKY transcription factor 46
TrEMBLA0A2T8KGM41e-158A0A2T8KGM4_9POAL; Uncharacterized protein
STRINGPavir.Ca00084.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15881913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.15e-13WRKY DNA-binding protein 38