PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG022800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 291aa    MW: 33065.7 Da    PI: 6.6917
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG022800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.94.2e-18138202359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.....STTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.....dpkvveitYegeHnhe 59 
                          Dg +WrKYGqK+++++++prsYYrCt++   +C+++k v++++e     +p + +++Y+ +H+++
  Pavir.8KG022800.1.p 138 DGRQWRKYGQKHINKAKHPRSYYRCTYRkeqDCKATKTVQQQDEstgtdNPVMYTVVYHFQHTCK 202
                          999************************98999********986422222678999*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.7E-21123202IPR003657WRKY domain
SuperFamilySSF1182901.7E-19132202IPR003657WRKY domain
SMARTSM007742.4E-27136203IPR003657WRKY domain
PfamPF031062.5E-22138202IPR003657WRKY domain
PROSITE profilePS5081114.183138178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKQHNSRCLP QSSPSDRPSF VSDHGPAMKE IARGQSLVTQ LRAIVLPALQ ADQRCELVAQ  60
MFQNILDCSS RAITELQLQH QSDARPDDSM VDDKKRVRKI SSDDCIKEEG ATANPHHQHK  120
RRRSIDTVSL ETPVPHYDGR QWRKYGQKHI NKAKHPRSYY RCTYRKEQDC KATKTVQQQD  180
ESTGTDNPVM YTVVYHFQHT CKDNNGVDSG TDESETNTLS SSDSRSSIST TCTDPCDHQT  240
SLCDNKLIEK SADLVTKSLY EPLNMNPFAP LDLDYWELDA LLRFHLEPDN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-131382021069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG022800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805419.10.0probable WRKY transcription factor 62
TrEMBLA0A2T7E4I70.0A0A2T7E4I7_9POAL; Uncharacterized protein
STRINGPavir.J39511.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-18WRKY DNA-binding protein 70