PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG434200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 394aa    MW: 41667.6 Da    PI: 9.891
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG434200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.57.4e-1879161272
             trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                          Wt +e+l Li+a+r +++r   +             + +++W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e++++
  Pavir.7NG434200.1.p  79 WTLHETLILITAKRLDDDRRAGAVgaahghgspttpRSEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKVRDYESRNA 161
                          **************555544432123344455555599***************************************999864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.79571147IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-572149IPR009057Homeodomain-like
PfamPF138372.1E-1278160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSANTVAKAA PPMSGSSDPS PSSSAAASPL ALLRPHPHPH AHAHAHAGHL TPPSPASGAP  60
APPPPSPASA PRDYRKGNWT LHETLILITA KRLDDDRRAG AVGAAHGHGS PTTPRSEQRW  120
KWVENYCWNH GCLRSQNQCN DKWDNLLRDY KKVRDYESRN AAAAAAAAPG GGGGGAGALP  180
SYWSMERHER KDRNLPTNLA PEVFDALTDV LSRRAARRGG AAIAAAAPPP LALPPPPPPP  240
PPPPAPPSPP KPIVAQPRAP PPPPLPLPTA VAPPATSVSA EGLTGSSESG EEEDGSSEEG  300
VEPEPKRRRL NRLGSSVVRS ATVLARTLVA CEEKRERRHR EVLELEERRL RLEEQRTEVR  360
RQGFAGLISA VNSLSTAINA LVSDHRSGDS ASR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305309KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG434200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668720.0BT066872.1 Zea mays full-length cDNA clone ZM_BFb0081B07 mRNA, complete cds.
GenBankBT0698390.0BT069839.1 Zea mays full-length cDNA clone ZM_BFb0299M14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448740.21e-130trihelix transcription factor ASR3
TrEMBLA0A2T7D1G81e-135A0A2T7D1G8_9POAL; Uncharacterized protein
STRINGPavir.Gb00087.1.p1e-139(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-40Trihelix family protein