PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7NG251500.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 262aa MW: 28472.4 Da PI: 9.7879 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 77.2 | 2.1e-24 | 153 | 215 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv L+a N +L++el++lkk ++ +++e+ Pavir.7NG251500.4.p 153 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAINGTLRSELDQLKKACEDMEAEN 215 89*********************************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.0E-17 | 148 | 213 | No hit | No description |
Pfam | PF00170 | 7.9E-22 | 153 | 215 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 5.3E-21 | 153 | 217 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.587 | 155 | 218 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.5E-11 | 156 | 211 | No hit | No description |
CDD | cd14702 | 3.27E-17 | 158 | 208 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 160 | 175 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MQAYYAAGGQ PYAWHAAQSV PYTAGEPVAV AEGKSKRKSS GAPSVCSASA SGSDGRSKET 60 SEKRDASAEH KLLPSTKRRK ATSANVQGEP SQNATMQDAA AETRSAAKRR SEGKLLVSTT 120 EMTTISNARP NLNIGINLWS NSPVKAETSG QDERELKRER RKQSNRESAR RSRLRKQQEC 180 EELAQKVTDL TAINGTLRSE LDQLKKACED MEAENSQLMG ELEQGEAPSV VTTLSMHIDT 240 AKVHHGKSHQ HRDKNNNDNK G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 175 | RRSRLRK |
2 | 169 | 176 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.35462 | 0.0 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7NG251500.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792640.1 | 1e-136 | DNA-binding protein EMBP-1-like isoform X1 | ||||
Swissprot | P25032 | 3e-56 | EMBP1_WHEAT; DNA-binding protein EMBP-1 | ||||
TrEMBL | A0A2T7BZC5 | 1e-138 | A0A2T7BZC5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J02462.1.p | 1e-166 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.2 | 2e-27 | G-box binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7NG251500.4.p |