PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG251500.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 263aa    MW: 28559.5 Da    PI: 9.7879
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG251500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_177.22.1e-24154216163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv  L+a N +L++el++lkk ++ +++e+
  Pavir.7NG251500.3.p 154 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAINGTLRSELDQLKKACEDMEAEN 216
                          89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.9E-17149214No hitNo description
PfamPF001708.0E-22154216IPR004827Basic-leucine zipper domain
SMARTSM003385.3E-21154218IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.587156219IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-11157212No hitNo description
CDDcd147026.44E-17159209No hitNo description
PROSITE patternPS000360161176IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MQAYYAAGGQ PYAWHAAQSV PYTAGEPVAV AEGKSKRKSS GAPSVCSASA SGSSDGRSKE  60
TSEKRDASAE HKLLPSTKRR KATSANVQGE PSQNATMQDA AAETRSAAKR RSEGKLLVST  120
TEMTTISNAR PNLNIGINLW SNSPVKAETS GQDERELKRE RRKQSNRESA RRSRLRKQQE  180
CEELAQKVTD LTAINGTLRS ELDQLKKACE DMEAENSQLM GELEQGEAPS VVTTLSMHID  240
TAKVHHGKSH QHRDKNNNDN KG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176RRSRLRK
2170177RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.354620.0callus
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG251500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792640.11e-136DNA-binding protein EMBP-1-like isoform X1
SwissprotP250327e-57EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A2T7BZD11e-138A0A2T7BZD1_9POAL; Uncharacterized protein
STRINGPavir.J02462.1.p1e-167(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.22e-27G-box binding factor 1